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最終更新日:2024年4月22日

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Application of Biometrics and Biostatistics to Agricultural Science

Statistics and biometrics have emerged as crucial disciplines not only in agricultural sciences but also in various other fields. This significance is primarily attributed to three factors: Firstly, advancements in data measurement techniques have facilitated the collection of extensive and diverse biological and agronomic data that were previously unattainable. Secondly, the evolution of data science methodologies has enabled the integration and modeling of such collected data. Thirdly, the enhancement of computational capabilities has empowered the utilization of these methodologies. These advancements have rendered statistical and biometric methods indispensable for extracting insights from the vast and varied biological and agronomic datasets.


Throughout this lecture series, a diverse array of biological and agronomic datasets will serve as illustrative examples to demonstrate various analytical methods. Delivered in a hands-on format, utilizing R, Python, and Matlab, the aim is to equip students with practical analysis skills. The initial portion of the course, spanning the first one-third, will focus primarily on techniques for summarizing, visualizing, and modeling relationships within multivariate datasets. In the subsequent one-third, students will delve into linear models, linear mixed models, local regression, and nonlinear models. Finally, in the last segment, students will explore image analysis, machine learning, and deep learning methods. While the course will cover a broad spectrum of methods, ranging from introductory to advanced levels, the emphasis will be on developing the capability to independently conduct analyses rather than on elaborating on the theoretical underpinnings of the methods.
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時間割/共通科目コード
コース名
教員
学期
時限
3901165
Application of Biometrics and Biostatistics to Agricultural Science
岩田 洋佳
S1 S2
火曜5限
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講義使用言語
英語
単位
2
実務経験のある教員による授業科目
NO
他学部履修
開講所属
農学生命科学研究科
授業計画
Lecture 1: Guidance and introduction Lecture 2: Understanding variability in multivariates: dimensional reduction and visualization Lecture 3: Predicting univariate based on multivariates: multivariate regression, regularized regression, kernel regression Lecture 4: Predicting classes based on multivariates: logistic regression, support vector machines, random forests Lecture 5: Probability distribution other than Gaussian distribution; Maximum likelihood; Generalized Linear Model and its applications Lecture 6: Fixed effect; Random effect; Generalized Linear Mixed Model and its applications Lecture 7: Local regression; Spline; Generalized Additive Model and its applications Lecture 8: Non-linear functions in agriculture; Non-linear regression; introduction to MCMC Lecture 9: Fundamentals of image analysis: Vectors and matrices operation Lecture 10: Image analysis for agriculture: Machine learning Lecture 11: Image analysis for agriculture: Deep learning Lecture 12: Image analysis for agriculture: Multi-dimensional imaging Lecture 13: Modeling relationships within multivariates: canonical correlation Analysis, PLS regression, network analysis Lecture 14: Final Q&A and Wrap Up
授業の方法
This lecture will be conducted online, utilizing the Zoom platform for screen sharing with both video and audio functionalities. Lecture materials, provided in English, will be distributed before each lecture through the lecture series website (the address is provided below) and UTOL. To reinforce fundamental concepts covered in class, twelve small reports will be assigned.
成績評価方法
Evaluation will be based on reports. However, no grade will be given for poor attendance.
教科書
Lecture materials will be distributed through this lecture series website (the address is provided below) and UTOL.
参考書
Some reference books for further in-depth study will be introduced during the lecture.
履修上の注意
In this course, students will learn practical statistical and data science methods using R, Python, and Matlab. Students are required to use these programming environments on their own computers. The installation of these programming environments will be explained in the first class.
その他
Lectures are conducted in an online format (fully online). Language used: English (Medium of instrucion: E、Course materials: E) Lecturers: Hiroyoshi Iwata (https://www.researchgate.net/*****) Gen Sakurai (https://www.researchgate.net/*****) Wei Guo (https://www.researchgate.net/*****) Lecturers writing this syllabus: Hiroyoshi Iwata